Hello,
first of all, thanks a lot for the ability to still use the dataset and to submit results!
When trying to submit my test set predictions, I received below error. Do you have an idea whether the problem is in my generated label files or on the server?
Thanks a lot in advance and kind regards,
Marcel
Error message from 06/15/2021 13:38:38:
WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
Traceback (most recent call last):
File "/tmp/codalab/tmp2AMluK/run/program/evaluate.py", line 41, in
distfilter.Execute(gt == i, seg ==i)
File "/opt/conda/lib/python2.7/site-packages/SimpleITK/SimpleITK.py", line 35798, in Execute
return _SimpleITK.HausdorffDistanceImageFilter_Execute(self, image1, image2)
RuntimeError: Exception thrown in SimpleITK HausdorffDistanceImageFilter_Execute: /tmp/SimpleITK-build/ITK-prefix/include/ITK-4.13/itkDirectedHausdorffDistanceImageFilter.hxx:183:
itk::ERROR: pixelcount is equal to 0
Dear Marcel,
It looks like it's coming from your label files: you only segmented the heart and not the other organs. However there should also be some regions with the other organs labels.
Hope it helps!
Good luck
Caroline
Hello Caroline,
yes that's it! Thanks a lot for your fast support! :))