Hi,
When submitting a file for Public phase 3 I run into some troubles.
Even running the example from the starter kit, and naively zipping the output (as the submission form requires) I get:
Traceback (most recent call last):
File "/tmp/codalab/tmpOK_rRN/run/program/score.py", line 66, in
ref = tables.open_file(glob(os.path.join(input_dir, 'ref', '*.h*5'))[0])
IndexError: list index out of range
Running the command manually on my computer (and making sure that the hdf5 file is in a folder named 'ref') works just fine.
So my question is is there something going wrong during the unzipping? Or some other part of the submission?
Posted by: fnand @ Aug. 16, 2018, 9:48 a.m.Hi! Seems you are trying to submit .hdf5. In the last phase only .csv submissions are available to avoid any discrepancies in different kind of submissions. To to submit .csv
Posted by: HolyBayes @ Aug. 16, 2018, 11 a.m.Thanks, that solved it.
Posted by: fnand @ Aug. 16, 2018, 6:49 p.m.Can you clarify the format of the phase 3 submissions in csv? The instructions specify the need for a 'pred' column, does this go into the test_5-6.csv file? Does the zip file just contain test_5-6.csv with the 'pred' column?
Posted by: coreyjadams @ Aug. 22, 2018, 3:07 p.m.Your csv file should look something like this:
x y z event pred
75 178 61 5000 2
75 179 62 5000 2
75 178 63 5000 2
75 178 62 5000 2
76 177 61 5000 2
75 177 63 5000 2
74 178 62 5000 2
74 178 63 5000 2
76 178 60 5000 2
75 177 62 5000 2
76 178 61 5000 2
42 117 178 5000 2
74 177 64 5000 2
If you look at the csv version of the starter kit notebook the csv writer there formats the file correctly.
Posted by: fnand @ Aug. 23, 2018, 1:08 p.m.